Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t GPx5_Human.2.subseq.fa]
Hostname: [ws101139]

C4 Alignment:
------------
         Query: GPx5_Human
        Target: KI537663.1:subseq(1085138,200311) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold224, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 907
   Query range: 0 -> 221
  Target range: 92445 -> 100311

      1 : MetThrThrGlnLeuArgValValHisLeuLeuProLeuLeuLeuAlaCysPheValG :     20
          ||||||..!|||||||||!.!!.!:::|||...||||||...|||||| !!|||:!!|
          MetThrValGlnLeuArgAlaAlaTyrLeuPheProLeuPheLeuAlaGlyPheMetG
  92446 : ATGACTGTACAGTTAAGGGCCGCCtatcttttcccccttttcctagCTGGCTTCATGC :  92503

     21 : lnThrSerProLysGlnGluLys  >>>> Target Intron 1 >>>>  MetLys :     29
          ||:!!!:! !!|||! !||||||            249 bp           ::::!!
          lnSerAsnSerLysLeuGluLys++                         ++ValGlu
  92504 : AGTCAAATTCTAAGCTGGAGAAGgt.........................aggtAGAG :  92779

     30 :   >>>> Target Intron 2 >>>>  MetAspCysHisLysAspGluLysGlyTh :     39
                     2544 bp           |||||||||:!!||| !!! !||||||||
          ++                         ++MetAspCysTyrLysTyrValLysGlyTh
  92780 : gt.........................agaTGGATTGCTACAAATATGTGAAAGGTAC :  95353

     40 : rIleTyrAspTyrGluAlaIleAlaLeuAsnLysAsnGluTyrValSerPheLysGln :     58
          |||||||||||||!!:|||.!!.!!||||||  !!!.|||:!!:!!..!|||||||||
          rIleTyrAspTyrAspAlaPheThrLeuAsnGlyLysGluHisIleGlnPheLysGln
  95354 : CATCTATGATTATGATGCTTTCACTCTTAATGGAAAGGAACACATTCAGTTCAAGCAG :  95410

     59 : TyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaG :     78
          |||||||||||||||:!!||||||||||||||||||||||||||||||||||||||||
          TyrValGlyLysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaG
  95411 : TATGTGGGCAAGCATGTCCTTTTTGTCAATGTGGCCACCTATTGTGGTCTGACAGCTC :  95470

     79 : lnTyrPro{G}  >>>> Target Intron 3 >>>>  {lu}LeuAsnAlaLeuGl :     86
          ||:!!|||{|}           2813 bp           {||}|||!:!||||||||
          lnHisPro{G}++                         ++{lu}LeuSerAlaLeuGl
  95471 : AACATCCT{G}gt.........................ag{AA}CTGAGTGCACTTCA :  98307

     87 : nGluGluLeuLysProTyrGlyLeuValValLeuGlyPheProCysAsnGlnPheGly :    105
          ||||||||||||||||!:!! !||||||||||||||||||||||||||||||||||||
          nGluGluLeuLysProPheAspLeuValValLeuGlyPheProCysAsnGlnPheGly
  98308 : GGAGGAGCTGAAGCCGTTTGACCTAGTTGTGTTGGGCTTTCCCTGCAACCAATTTGGA :  98364

    106 : LysGlnGluProGlyAspAsnLysGluIleLeuProGlyLeu{Ly}  >>>> Targe :    120
          |||||||||||||||!!:|||..!||||||||||||||||||{||}            
          LysGlnGluProGlyGluAsnSerGluIleLeuProGlyLeu{Ly}++          
  98365 : AAGCAAGAACCAGGAGAGAACTCAGAGATCCTTCCGGGACTG{AA}gt.......... :  98413

    121 : t Intron 4 >>>>  {s}TyrValArgProGlyGlyGlyPheValProSerPheGl :    133
          477 bp           {|}|||||||||||||||||||||!:!||||||!:!|||||
                         ++{s}TyrValArgProGlyGlyGlyTyrValProAsnPheGl
  98414 : ...............ag{G}TATGTCCGTCCAGGAGGAGGATATGTACCTAATTTCCA :  98925

    134 : nLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheSerPheLeu :    152
          ||||||||||||||||||||||||||||:!!||||||||||||||||||!!!||||||
          nLeuPheGluLysGlyAspValAsnGlyLysLysGluGlnLysValPheThrPheLeu
  98926 : GCTTTTTGAGAAAGGGGATGTGAATGGCAAAAAAGAGCAGAAAGTCTTCACCTTCTTG :  98982

    153 : Lys  >>>> Target Intron 5 >>>>  HisSerCysProHisProSerGluIl :    162
          |||           1120 bp           !!.|||||||||||||||||||||:!
          Lys++                         ++GlnSerCysProHisProSerGluLe
  98983 : AAGgt.........................agCAATCCTGTCCTCACCCTTCTGAACT : 100132

    163 : eLeuGlyThrPheLysSerIleSerTrpAspProValLysValHisAspIleArgTrp :    181
          !:!!|||:!!.!!|||  !|||||||||!!:||||||! !!.!|||||||||||||||
          uMetGlySerIleLysHisIleSerTrpGluProValMetAlaHisAspIleArgTrp
 100133 : TATGGGCTCAATCAAGCATATATCCTGGGAACCCGTCATGGCCCACGACATCCGCTGG : 100189

    182 : AsnPheGluLysPheLeuValGlyProAspGlyIleProValMetArgTrpSerHisA :    201
          |||||||||||||||||||||||||||||||||:!!|||||||||||||||! !|||!
          AsnPheGluLysPheLeuValGlyProAspGlyValProValMetArgTrpPheHisG
 100190 : AATTTTGAAAAGTTCCTGGTGGGACCTGATGGAGTCCCTGTCATGCGCTGGTTCCATC : 100249

    202 : rgAlaThrValSerSerValLysThrAspIleLeuAlaTyrLeuLysGlnPheLysTh :    220
          :!||| !!||||||!!!||||||:!!||||||||||||||||||||||||.!!|||||
          lnAlaProValSerThrValLysSerAspIleLeuAlaTyrLeuLysGlnLeuLysTh
 100250 : AGGCTCCAGTCAGTACAGTCAAGTCAGATATTCTGGCATACTTGAAACAGCTCAAAAC : 100306

    221 : rLys :    221
          |:!!
          rGlu
 100307 : TGAA : 100311

vulgar: GPx5_Human 0 221 . KI537663.1:subseq(1085138,200311) 92445 100311 + 907 M 27 81 5 0 2 I 0 245 3 0 2 M 2 6 5 0 2 I 0 2540 3 0 2 M 51 153 S 0 1 5 0 2 I 0 2809 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 473 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1116 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	gene	92446	100311	907	+	.	gene_id 1 ; sequence GPx5_Human ; gene_orientation +
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	92446	92526	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	92446	92526	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice5	92527	92528	.	+	.	intron_id 1 ; splice_site "GT"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	intron	92527	92775	.	+	.	intron_id 1
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice3	92774	92775	.	+	.	intron_id 0 ; splice_site "ag"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	92776	92781	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	92776	92781	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice5	92782	92783	.	+	.	intron_id 2 ; splice_site "GT"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	intron	92782	95325	.	+	.	intron_id 2
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice3	95324	95325	.	+	.	intron_id 1 ; splice_site "ag"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	95326	95479	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	95326	95479	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice5	95480	95481	.	+	.	intron_id 3 ; splice_site "GT"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	intron	95480	98292	.	+	.	intron_id 3
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice3	98291	98292	.	+	.	intron_id 2 ; splice_site "AG"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	98293	98410	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	98293	98410	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice5	98411	98412	.	+	.	intron_id 4 ; splice_site "GT"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	intron	98411	98887	.	+	.	intron_id 4
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice3	98886	98887	.	+	.	intron_id 3 ; splice_site "AG"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	98888	98987	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	98888	98987	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice5	98988	98989	.	+	.	intron_id 5 ; splice_site "GT"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	intron	98988	100107	.	+	.	intron_id 5
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	splice3	100106	100107	.	+	.	intron_id 4 ; splice_site "aG"
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	cds	100108	100311	.	+	.	
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	exon	100108	100311	.	+	.	insertions 0 ; deletions 0
KI537663.1:subseq(1085138,200311)	exonerate:protein2genome:local	similarity	92446	100311	907	+	.	alignment_id 1 ; Query GPx5_Human ; Align 92446 1 81 ; Align 92776 28 6 ; Align 95326 30 153 ; Align 98295 82 114 ; Align 98889 121 99 ; Align 100108 154 204
# --- END OF GFF DUMP ---
#


